Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HuH7 cells, mitotic block and release
cell type
HuH7
cycling state
mitotic
antibody
FoxA1
vendor/catalog/lot
Abcam ab23738 (lot #737921)

Sequenced DNA Library

library_name
GSM958755: FoxA1 ChIP-seq in Mitotic Cells 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
27029134
Reads aligned (%)
81.8
Duplicates removed (%)
15.9
Number of peaks
1160 (qval < 1E-05)

hg38

Number of total reads
27029134
Reads aligned (%)
84.6
Duplicates removed (%)
13.9
Number of peaks
1019 (qval < 1E-05)

Base call quality data from DBCLS SRA