SRX159090
GSM958753: FoxA1 ChIP-seq in Asynchronous Cells 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HuH7 cells, asynchronously cycling
cell type
HuH7
cycling state
asynchronous
antibody
FoxA1
vendor/catalog/lot
Abcam ab23738 (lot #737921)

Sequenced DNA Library

library_name
GSM958753: FoxA1 ChIP-seq in Asynchronous Cells 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27620655
Reads aligned (%)
97.3
Duplicates removed (%)
24.2
Number of peaks
6689 (qval < 1E-05)

hg19

Number of total reads
27620655
Reads aligned (%)
96.5
Duplicates removed (%)
25.9
Number of peaks
6839 (qval < 1E-05)

Base call quality data from DBCLS SRA