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For hg19
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: HuH-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX159090
GSM958753: FoxA1 ChIP-seq in Asynchronous Cells 2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
source_name
HuH7 cells, asynchronously cycling
cell type
HuH7
cycling state
asynchronous
antibody
FoxA1
vendor/catalog/lot
Abcam ab23738 (lot #737921)
Sequenced DNA Library
library_name
GSM958753: FoxA1 ChIP-seq in Asynchronous Cells 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
27620655
Reads aligned (%)
71.5
Duplicates removed (%)
25.9
Number of peaks
6839 (qval < 1E-05)
hg38
Number of total reads
27620655
Reads aligned (%)
73.8
Duplicates removed (%)
24.2
Number of peaks
6689 (qval < 1E-05)
Base call quality data from
DBCLS SRA