Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HuH7 cells, asynchronously cycling
cell type
HuH7
cycling state
asynchronous
antibody
FoxA1
vendor/catalog/lot
Abcam ab23738 (lot #737921)

Sequenced DNA Library

library_name
GSM958752: FoxA1 ChIP-seq in Asynchronous Cells 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
26143794
Reads aligned (%)
71.4
Duplicates removed (%)
25.4
Number of peaks
7288 (qval < 1E-05)

hg38

Number of total reads
26143794
Reads aligned (%)
73.6
Duplicates removed (%)
23.8
Number of peaks
7135 (qval < 1E-05)

Base call quality data from DBCLS SRA