SRX158108
GSM957609: GATA3 RPMI-8402 ChipSeq, rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Blood
Cell type
RPMI 8402
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line, GATA3 ChIP
cell line
RPMI-8402
cell type
T-cell acute lymphoblastic leukemia (T-ALL) cells
chip antibody
GATA3
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM957609: GATA3 RPMI-8402_ChipSeq, rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
15791051
Reads aligned (%)
88.9
Duplicates removed (%)
40.0
Number of peaks
5073 (qval < 1E-05)

hg38

Number of total reads
15791051
Reads aligned (%)
89.6
Duplicates removed (%)
38.8
Number of peaks
4984 (qval < 1E-05)

Base call quality data from DBCLS SRA