Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC (WiCell Research Institute WA01)
cell type
human embryonic stem cells
karyotype
normal
cell lineage
inner cell mass, sex: M
chip antibody
YY1 (Santa Cruz Biotechnology, sc-1703X)

Sequenced DNA Library

library_name
GSM956127: USC_ChIPSeq_H1-hESC_YY1_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
19206107
Reads aligned (%)
81.1
Duplicates removed (%)
5.6
Number of peaks
2595 (qval < 1E-05)

hg38

Number of total reads
19206107
Reads aligned (%)
83.0
Duplicates removed (%)
4.4
Number of peaks
2492 (qval < 1E-05)

Base call quality data from DBCLS SRA