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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: YY1
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX157662
GSM956127: USC ChIPSeq H1-hESC YY1 UCDavis; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
YY1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
H1-hESC (WiCell Research Institute WA01)
cell type
human embryonic stem cells
karyotype
normal
cell lineage
inner cell mass, sex: M
chip antibody
YY1 (Santa Cruz Biotechnology, sc-1703X)
Sequenced DNA Library
library_name
GSM956127: USC_ChIPSeq_H1-hESC_YY1_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
19206107
Reads aligned (%)
86.9
Duplicates removed (%)
4.4
Number of peaks
2492 (qval < 1E-05)
hg19
Number of total reads
19206107
Reads aligned (%)
85.9
Duplicates removed (%)
5.6
Number of peaks
2595 (qval < 1E-05)
Base call quality data from
DBCLS SRA