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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: HUVEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX157612
GSM955982: H3K4me1 hypoxia ChIP-seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
H3K4me1 hypoxia ChIP-seq
cell type
HUVEC
chip antibody
H3K4me1 [kindly provided by Dr Kimura CMA302 (Cell Struct Funct.2008;33(1):61-73)]
passage
within 6 times
Sequenced DNA Library
library_name
GSM955982: H3K4me1 hypoxia ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
26385179
Reads aligned (%)
97.7
Duplicates removed (%)
31.3
Number of peaks
20883 (qval < 1E-05)
hg19
Number of total reads
26385179
Reads aligned (%)
97.1
Duplicates removed (%)
32.0
Number of peaks
20860 (qval < 1E-05)
Base call quality data from
DBCLS SRA