SRX157611
GSM955981: H3K4me1 normoxia ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
H3K4me1 normoxia ChIP-seq
cell type
HUVEC
chip antibody
H3K4me1 [kindly provided by Dr Kimura CMA302 (Cell Struct Funct.2008;33(1):61-73)]
passage
within 6 times

Sequenced DNA Library

library_name
GSM955981: H3K4me1 normoxia ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15115784
Reads aligned (%)
90.0
Duplicates removed (%)
23.5
Number of peaks
208 (qval < 1E-05)

hg19

Number of total reads
15115784
Reads aligned (%)
89.4
Duplicates removed (%)
24.4
Number of peaks
353 (qval < 1E-05)

Base call quality data from DBCLS SRA