Antigen

Antigen Class

Histone

Antigen

H3K27me3

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

source_name

HCT116 with homozygous deletion of DNMT3b and DNMT1 (Rhee et al Nature 2002)

technique

ChIP-sequencing

starting molecule

chromatin

antibody/capture

anti-H3K27me3 (Millipore, 07-449)

Sequenced DNA Library

library_name

GSM955165: ChIP-seq_HCT116_DKO_H3K27me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

17678636

Reads aligned (%)

98.5

Duplicates removed (%)

6.7

Number of peaks

127 (qval < 1E-05)

hg19

Number of total reads

17678636

Reads aligned (%)

98.0

Duplicates removed (%)

7.2

Number of peaks

134 (qval < 1E-05)