Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells
strain background
C57BL/6
cell type
embryonic stem cells (ESCs)
genotype/variation
Np95 (flox/flox) conditional alleles; CreERT2 transgene
treated with
Without 4-OHT (day 0)
chip antibody
input DNA
molecule subtype
Native chromatin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated using QIAGEN All-prep kit Libraries were prepared according to NEB's instructions accompanying the NEBNext® ChIP-seq Library Prep Reagent set for Illumina. Adapter ligated DNA was PCR amplified with Illumina primers for 15 cycles. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Hi-Seq 1000 following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
58642480
Reads aligned (%)
87.5
Duplicates removed (%)
34.4
Number of peaks
2422 (qval < 1E-05)

mm9

Number of total reads
58642480
Reads aligned (%)
87.1
Duplicates removed (%)
34.3
Number of peaks
2635 (qval < 1E-05)

Base call quality data from DBCLS SRA