SRX1568867
GSM2058439: E2A ChIP-Seq DSG + HCHO Mature FO B cell 22337; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
FO B cell
strain
C57BL/6
genotype
Tcf3,4(fl/fl)
cell preparation
Ex-vivo, MACS-sorted
cell sorting strategy
CD43– and CD23+ MACS-sorted
chip antibody
Tcf3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chloroform extraction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53049885
Reads aligned (%)
94.0
Duplicates removed (%)
24.2
Number of peaks
3797 (qval < 1E-05)

mm9

Number of total reads
53049885
Reads aligned (%)
93.8
Duplicates removed (%)
24.2
Number of peaks
3807 (qval < 1E-05)

Base call quality data from DBCLS SRA