Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
DF-NCCIT_NP
cell type
embroynic cancer
cell line
NCCIT
cell status
differentiated

Sequenced DNA Library

library_name
GSM952554: DF-NCCIT_NP
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
371171027
Reads aligned (%)
94.1
Duplicates removed (%)
59.9
Number of peaks
63140 (qval < 1E-05)

hg19

Number of total reads
371171027
Reads aligned (%)
93.6
Duplicates removed (%)
60.4
Number of peaks
71495 (qval < 1E-05)

Base call quality data from DBCLS SRA