SRX156141
GSM952553: UD-NCCIT NP; Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
UD-NCCIT_NP
cell type
embroynic cancer
cell line
NCCIT
cell status
undifferentiated

Sequenced DNA Library

library_name
GSM952553: UD-NCCIT_NP
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
459112671
Reads aligned (%)
82.5
Duplicates removed (%)
55.6
Number of peaks
77523 (qval < 1E-05)

hg19

Number of total reads
459112671
Reads aligned (%)
82.0
Duplicates removed (%)
56.0
Number of peaks
88650 (qval < 1E-05)

Base call quality data from DBCLS SRA