Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
DF-H3K4me3_ChIP
cell type
embroynic cancer
cell line
NCCIT
cell status
differentiated
chip antibody
H3K4me3
antibody source
Abcam (ab1012)

Sequenced DNA Library

library_name
GSM952466: DF-H3K4me3_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
12119332
Reads aligned (%)
72.0
Duplicates removed (%)
44.3
Number of peaks
20705 (qval < 1E-05)

hg19

Number of total reads
12119332
Reads aligned (%)
71.7
Duplicates removed (%)
44.9
Number of peaks
20657 (qval < 1E-05)

Base call quality data from DBCLS SRA