SRX156118
GSM952463: DF-DNMT1 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DNMT1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
DF-DNMT1_ChIP
cell type
embroynic cancer
cell line
NCCIT
cell status
differentiated
chip antibody
DNMT1
antibody source
Santa Cruz (sc-10219)

Sequenced DNA Library

library_name
GSM952463: DF-DNMT1_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21600000
Reads aligned (%)
98.9
Duplicates removed (%)
4.2
Number of peaks
363 (qval < 1E-05)

hg19

Number of total reads
21600000
Reads aligned (%)
98.3
Duplicates removed (%)
6.1
Number of peaks
554 (qval < 1E-05)

Base call quality data from DBCLS SRA