SRX156116
GSM952461: UD-H3K36me3 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
UD-H3K36me3_ChIP
cell type
embroynic cancer
cell line
NCCIT
cell status
undifferentiated
chip antibody
H3K36me3
antibody source
Abcam (ab9050)

Sequenced DNA Library

library_name
GSM952461: UD-H3K36me3_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24871028
Reads aligned (%)
98.9
Duplicates removed (%)
3.5
Number of peaks
745 (qval < 1E-05)

hg38

Number of total reads
24871028
Reads aligned (%)
99.5
Duplicates removed (%)
2.0
Number of peaks
571 (qval < 1E-05)

Base call quality data from DBCLS SRA