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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: NCCIT
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX156113
GSM952458: UD-H3K4me3 ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma
Attributes by original data submitter
Sample
source_name
UD-H3K4me3_ChIP
cell type
embroynic cancer
cell line
NCCIT
cell status
undifferentiated
chip antibody
H3K4me3
antibody source
Abcam (ab1012)
Sequenced DNA Library
library_name
GSM952458: UD-H3K4me3_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24135022
Reads aligned (%)
96.9
Duplicates removed (%)
80.6
Number of peaks
10498 (qval < 1E-05)
hg19
Number of total reads
24135022
Reads aligned (%)
96.2
Duplicates removed (%)
82.1
Number of peaks
10414 (qval < 1E-05)
Base call quality data from
DBCLS SRA