Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
patient colon tumor
cell type
Patient Tumor
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951909: colon-Tumor-2_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
19741721
Reads aligned (%)
39.8
Duplicates removed (%)
49.3
Number of peaks
733 (qval < 1E-05)

hg38

Number of total reads
19741721
Reads aligned (%)
41.9
Duplicates removed (%)
47.2
Number of peaks
480 (qval < 1E-05)

Base call quality data from DBCLS SRA