SRX155773
GSM951907: colon-Tumor-1 HSF1 ChIPSeq 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
patient colon tumor
cell type
Patient Tumor
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951907: colon-Tumor-1_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20421721
Reads aligned (%)
95.1
Duplicates removed (%)
18.5
Number of peaks
737 (qval < 1E-05)

hg19

Number of total reads
20421721
Reads aligned (%)
94.2
Duplicates removed (%)
20.1
Number of peaks
938 (qval < 1E-05)

Base call quality data from DBCLS SRA