SRX155771
GSM951905: Breast-Tumor-2 IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
patient breast tumor
cell type
Patient Tumor
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951905: Breast-Tumor-2_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24078770
Reads aligned (%)
95.7
Duplicates removed (%)
35.3
Number of peaks
188 (qval < 1E-05)

hg19

Number of total reads
24078770
Reads aligned (%)
95.0
Duplicates removed (%)
36.7
Number of peaks
768 (qval < 1E-05)

Base call quality data from DBCLS SRA