SRX155769
GSM951903: Breast-Tumor-2 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
patient breast tumor
cell type
Patient Tumor
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951903: Breast-Tumor-2_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22420436
Reads aligned (%)
96.6
Duplicates removed (%)
3.1
Number of peaks
454 (qval < 1E-05)

hg19

Number of total reads
22420436
Reads aligned (%)
95.7
Duplicates removed (%)
4.4
Number of peaks
906 (qval < 1E-05)

Base call quality data from DBCLS SRA