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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HSF1
wikigenes
PDBj
CellType: BPE
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX155763
GSM951897: BPE HS HSF1 ChIPSeq 2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HSF1
Cell type
Cell type Class
Breast
Cell type
BPE
NA
NA
Attributes by original data submitter
Sample
source_name
BPE cells
cell type
Immortalized mammary epithelial cells
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Non-tumorigenic
Sequenced DNA Library
library_name
GSM951897: BPE_HS_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 1000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
31413072
Reads aligned (%)
98.6
Duplicates removed (%)
69.8
Number of peaks
1253 (qval < 1E-05)
hg19
Number of total reads
31413072
Reads aligned (%)
97.8
Duplicates removed (%)
71.4
Number of peaks
1124 (qval < 1E-05)
Base call quality data from
DBCLS SRA