SRX155761
GSM951895: BT20 HSF1 ChIPSeq 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
BT-20
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
BT20 cells
cell type
breast cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951895: BT20_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
39824188
Reads aligned (%)
83.7
Duplicates removed (%)
77.9
Number of peaks
817 (qval < 1E-05)

hg38

Number of total reads
39824188
Reads aligned (%)
84.5
Duplicates removed (%)
75.8
Number of peaks
751 (qval < 1E-05)

Base call quality data from DBCLS SRA