SRX155754
GSM951888: SKBR3 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
SK-BR-3
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
SKBR3 cells
cell type
breast cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951888: SKBR3_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13651909
Reads aligned (%)
91.7
Duplicates removed (%)
3.8
Number of peaks
648 (qval < 1E-05)

hg19

Number of total reads
13651909
Reads aligned (%)
90.8
Duplicates removed (%)
5.1
Number of peaks
692 (qval < 1E-05)

Base call quality data from DBCLS SRA