SRX155753
GSM951887: NCIH441 IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
NCIH441 cells
cell type
lung cancer cell line
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951887: NCIH441_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20625913
Reads aligned (%)
78.2
Duplicates removed (%)
37.9
Number of peaks
501 (qval < 1E-05)

hg19

Number of total reads
20625913
Reads aligned (%)
77.5
Duplicates removed (%)
39.7
Number of peaks
696 (qval < 1E-05)

Base call quality data from DBCLS SRA