SRX155748
GSM951882: MCF7 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
cell type
breast cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951882: MCF7_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32307593
Reads aligned (%)
68.2
Duplicates removed (%)
6.3
Number of peaks
278 (qval < 1E-05)

hg19

Number of total reads
32307593
Reads aligned (%)
67.5
Duplicates removed (%)
7.6
Number of peaks
790 (qval < 1E-05)

Base call quality data from DBCLS SRA