SRX155747
GSM951881: HT29 IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HT-29
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HT29 cells
cell type
colon cancer cell line
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951881: HT29_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35889061
Reads aligned (%)
94.0
Duplicates removed (%)
75.2
Number of peaks
903 (qval < 1E-05)

hg19

Number of total reads
35889061
Reads aligned (%)
93.1
Duplicates removed (%)
77.2
Number of peaks
946 (qval < 1E-05)

Base call quality data from DBCLS SRA