Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
HT-29
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HT29 cells
cell type
colon cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951880: HT29_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
43264678
Reads aligned (%)
33.4
Duplicates removed (%)
64.4
Number of peaks
1095 (qval < 1E-05)

hg38

Number of total reads
43264678
Reads aligned (%)
35.5
Duplicates removed (%)
62.6
Number of peaks
1080 (qval < 1E-05)

Base call quality data from DBCLS SRA