Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT-15
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HCT15 cells
cell type
colon cancer cell line
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951878: HCT15_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
16517466
Reads aligned (%)
89.0
Duplicates removed (%)
13.2
Number of peaks
435 (qval < 1E-05)

hg19

Number of total reads
16517466
Reads aligned (%)
88.2
Duplicates removed (%)
14.3
Number of peaks
629 (qval < 1E-05)

Base call quality data from DBCLS SRA