Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
HCT-15
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HCT15 cells
cell type
colon cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951877: HCT15_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
19375819
Reads aligned (%)
57.4
Duplicates removed (%)
36.1
Number of peaks
669 (qval < 1E-05)

hg38

Number of total reads
19375819
Reads aligned (%)
59.0
Duplicates removed (%)
34.8
Number of peaks
446 (qval < 1E-05)

Base call quality data from DBCLS SRA