SRX155738
GSM951872: ZR751 IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
ZR-75-1
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
ZR751 cells
cell type
breast cancer cell line
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951872: ZR751_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24356116
Reads aligned (%)
95.3
Duplicates removed (%)
27.9
Number of peaks
538 (qval < 1E-05)

hg19

Number of total reads
24356116
Reads aligned (%)
94.5
Duplicates removed (%)
29.6
Number of peaks
764 (qval < 1E-05)

Base call quality data from DBCLS SRA