SRX155732
GSM951866: MCF10A HS IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A CELLS
cell type
Immortalized mammary epithelial cells
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Non-tumorigenic

Sequenced DNA Library

library_name
GSM951866: MCF10A_HS_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24143031
Reads aligned (%)
75.0
Duplicates removed (%)
24.2
Number of peaks
580 (qval < 1E-05)

hg19

Number of total reads
24143031
Reads aligned (%)
74.3
Duplicates removed (%)
25.7
Number of peaks
753 (qval < 1E-05)

Base call quality data from DBCLS SRA