SRX155724
GSM951858: HMLER IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMLE
NA
NA

Attributes by original data submitter

Sample

source_name
HMLER cells
cell type
Transformed mammary epithelial cells
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951858: HMLER_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15590517
Reads aligned (%)
89.2
Duplicates removed (%)
51.9
Number of peaks
208 (qval < 1E-05)

hg19

Number of total reads
15590517
Reads aligned (%)
88.1
Duplicates removed (%)
53.2
Number of peaks
505 (qval < 1E-05)

Base call quality data from DBCLS SRA