SRX155723
GSM951857: HMLER HSF1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
HMLE
NA
NA

Attributes by original data submitter

Sample

source_name
HMLER cells
cell type
Transformed mammary epithelial cells
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951857: HMLER_HSF1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15311556
Reads aligned (%)
94.7
Duplicates removed (%)
37.8
Number of peaks
407 (qval < 1E-05)

hg19

Number of total reads
15311556
Reads aligned (%)
93.6
Duplicates removed (%)
39.1
Number of peaks
581 (qval < 1E-05)

Base call quality data from DBCLS SRA