SRX155718
GSM951852: BPE IGG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
BPE
NA
NA

Attributes by original data submitter

Sample

source_name
BPE cells
cell type
Immortalized mammary epithelial cells
antibody
IGG (Santa Cruz, sc-2027, Lot# C2210)
tumorigenic or nontumorigenic
Non-tumorigenic

Sequenced DNA Library

library_name
GSM951852: BPE_IGG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20910500
Reads aligned (%)
91.9
Duplicates removed (%)
72.1
Number of peaks
143 (qval < 1E-05)

hg19

Number of total reads
20910500
Reads aligned (%)
90.5
Duplicates removed (%)
73.6
Number of peaks
229 (qval < 1E-05)

Base call quality data from DBCLS SRA