Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Prostate cells
cell line
PC3
passages
22-25
antibodies
LSD1 (Abcam, lot ab17721)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and ChIP-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
19589469
Reads aligned (%)
0.0
Duplicates removed (%)
26.3
Number of peaks
0 (qval < 1E-05)

hg38

Number of total reads
19589469
Reads aligned (%)
0.0
Duplicates removed (%)
26.2
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA