SRX155527
GSM950849: ASXL1sh2 WCE ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
UKE-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
UKE-1
cell type
Leukemia cell line
cell line
UKE-1
variation
ASXL1sh2
antibody
none (WCE)

Sequenced DNA Library

library_name
GSM950849: ASXL1sh2_WCE_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40654741
Reads aligned (%)
98.1
Duplicates removed (%)
6.7
Number of peaks
1167 (qval < 1E-05)

hg19

Number of total reads
40654741
Reads aligned (%)
97.2
Duplicates removed (%)
8.1
Number of peaks
1250 (qval < 1E-05)

Base call quality data from DBCLS SRA