SRX155383
GSM950325: Tot2, MSCV-IRF8, Day3, anti-IRF8; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf8

Cell type

Cell type Class
Blood
Cell type
Tot2
NA
NA

Attributes by original data submitter

Sample

source_name
Tot2 cells, MSCV-IRF8 transuced, Day3
cell line
Myeloid progenitor cell line Tot2 (derived from Irf8 knockout mouse)
culture condition
MSCV-IRF8 transduced
treatment period
3 days
chip antibody
goat anti-IRF8 antibody (C-19; Santa Cruz Biotechnology)

Sequenced DNA Library

library_name
GSM950325: Tot2, MSCV-IRF8, Day3, anti-IRF8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42115307
Reads aligned (%)
74.2
Duplicates removed (%)
51.2
Number of peaks
2452 (qval < 1E-05)

mm9

Number of total reads
42115307
Reads aligned (%)
74.0
Duplicates removed (%)
51.3
Number of peaks
2681 (qval < 1E-05)

Base call quality data from DBCLS SRA