Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Tot2
ATCC
MeSH
RIKEN BRC
SRX155381
GSM950323: Tot2, MSCV-IRF8, Day3, input DNA; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
Tot2
NA
NA
Attributes by original data submitter
Sample
source_name
Tot2 cells, MSCV-IRF8 transuced, Day3
cell line
Myeloid progenitor cell line Tot2 (derived from Irf8 knockout mouse)
culture condition
MSCV-IRF8 transduced
treatment period
3 days
chip antibody
none
Sequenced DNA Library
library_name
GSM950323: Tot2, MSCV-IRF8, Day3, input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
51256306
Reads aligned (%)
81.4
Duplicates removed (%)
33.6
Number of peaks
476 (qval < 1E-05)
mm9
Number of total reads
51256306
Reads aligned (%)
81.2
Duplicates removed (%)
33.6
Number of peaks
603 (qval < 1E-05)
Base call quality data from
DBCLS SRA