Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Bone
Cell type
U2OS
Tissue
bone
Lineage
mesoderm
Description
osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

Attributes by original data submitter

Sample

source_name
U2OS cells
antibody
c-MYC N262 (Santa Cruz, sc764)
cell line
U2OS

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq, libraries from GEO record GSE44672 were used and sequenced deeper.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
20122062
Reads aligned (%)
73.7
Duplicates removed (%)
17.7
Number of peaks
12745 (qval < 1E-05)

hg38

Number of total reads
20122062
Reads aligned (%)
74.9
Duplicates removed (%)
16.9
Number of peaks
12737 (qval < 1E-05)

Base call quality data from DBCLS SRA