Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell line
T-47D
cell type
Luminal cells
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM949579: T-47D_H3K27me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
11586116
Reads aligned (%)
62.5
Duplicates removed (%)
3.8
Number of peaks
201 (qval < 1E-05)

hg19

Number of total reads
11586116
Reads aligned (%)
62.2
Duplicates removed (%)
4.1
Number of peaks
221 (qval < 1E-05)

Base call quality data from DBCLS SRA