SRX154993
GSM949576: SUM159PT/T-47D H3K27me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell line
SUM159PT/T-47D
cell type
Heterofusion
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM949576: SUM159PT/T-47D_H3K27me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10847741
Reads aligned (%)
75.7
Duplicates removed (%)
1.9
Number of peaks
356 (qval < 1E-05)

hg19

Number of total reads
10847741
Reads aligned (%)
75.4
Duplicates removed (%)
2.2
Number of peaks
351 (qval < 1E-05)

Base call quality data from DBCLS SRA