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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: GHFT1-5
ATCC
MeSH
RIKEN BRC
SRX1549455
GSM2048382: input DNA; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
GHFT1-5
NA
NA
Attributes by original data submitter
Sample
source_name
pituitary cell line
cell line
GHFT1
passages
18-23
ChIP
input DNA
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and biotinylated PROP1-DNA complexes were isolated with streptavidin beads. Libraries were prepared according to Rubicon ThruPlex kit protocol (CAT. NO. R40012).
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
35771114
Reads aligned (%)
97.4
Duplicates removed (%)
9.0
Number of peaks
2725 (qval < 1E-05)
mm9
Number of total reads
35771114
Reads aligned (%)
97.3
Duplicates removed (%)
9.1
Number of peaks
2900 (qval < 1E-05)
Base call quality data from
DBCLS SRA