SRX1548135
GSM2046615: Day3 TY1 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse neural progenitor cells
cell type
ES-derived neural progenitor cells
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by submitter none provided by submitter

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36816796
Reads aligned (%)
85.0
Duplicates removed (%)
25.1
Number of peaks
11239 (qval < 1E-05)

mm9

Number of total reads
36816796
Reads aligned (%)
84.6
Duplicates removed (%)
25.0
Number of peaks
11217 (qval < 1E-05)

Base call quality data from DBCLS SRA