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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: PrEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX154498
GSM947527: PrEC Cells CTCF ChIP-seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Prostate
Cell type
PrEC
Tissue
prostate
Lineage
epithelial
Description
prostate epithelial cell line
Attributes by original data submitter
Sample
source_name
PrEC
cell line
PrEC
chip antibody
CTCF
chip antibody manufacturer
Millipore
Sequenced DNA Library
library_name
GSM947527: PrEC Cells CTCF ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22141705
Reads aligned (%)
96.8
Duplicates removed (%)
10.0
Number of peaks
31968 (qval < 1E-05)
hg19
Number of total reads
22141705
Reads aligned (%)
96.0
Duplicates removed (%)
11.1
Number of peaks
31891 (qval < 1E-05)
Base call quality data from
DBCLS SRA