Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Prostate
Cell type
PrEC
Tissue
prostate
Lineage
epithelial
Description
prostate epithelial cell line

Attributes by original data submitter

Sample

source_name
PrEC
cell line
PrEC
chip antibody
CTCF
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_name
GSM947527: PrEC Cells CTCF ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
22141705
Reads aligned (%)
96.8
Duplicates removed (%)
10.0
Number of peaks
31968 (qval < 1E-05)

hg19

Number of total reads
22141705
Reads aligned (%)
96.0
Duplicates removed (%)
11.1
Number of peaks
31891 (qval < 1E-05)

Base call quality data from DBCLS SRA