SRX154495
GSM947524: LNCaP Cells H3K4me3 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
chip antibody
H3K4me3
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM947524: LNCaP Cells H3K4me3 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26386714
Reads aligned (%)
92.3
Duplicates removed (%)
13.7
Number of peaks
16570 (qval < 1E-05)

hg19

Number of total reads
26386714
Reads aligned (%)
91.4
Duplicates removed (%)
15.3
Number of peaks
16618 (qval < 1E-05)

Base call quality data from DBCLS SRA