SRX154494
GSM947523: PrEC Cells H3K4me3 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
PrEC
Tissue
prostate
Lineage
epithelial
Description
prostate epithelial cell line

Attributes by original data submitter

Sample

source_name
PrEC
cell line
PrEC
chip antibody
H3K4me3
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM947523: PrEC Cells H3K4me3 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25038903
Reads aligned (%)
77.2
Duplicates removed (%)
14.6
Number of peaks
17761 (qval < 1E-05)

hg19

Number of total reads
25038903
Reads aligned (%)
76.6
Duplicates removed (%)
15.9
Number of peaks
17844 (qval < 1E-05)

Base call quality data from DBCLS SRA