Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
P493-6
NA
NA

Attributes by original data submitter

Sample

source_name
Lymphoma derived
cell line
P493

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TERT-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying theNEB NEXT ULTRA ILLUMINA Library preparation kit (E7370L).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
16206745
Reads aligned (%)
97.4
Duplicates removed (%)
7.6
Number of peaks
787 (qval < 1E-05)

hg19

Number of total reads
16206745
Reads aligned (%)
96.5
Duplicates removed (%)
7.7
Number of peaks
663 (qval < 1E-05)

Base call quality data from DBCLS SRA