Antigen

Antigen Class

TFs and others

Antigen

NR1H2

Cell type

Cell type Class

Digestive tract

Cell type

HT-29

Primary Tissue

Colon

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

LXRB_2h_GW3965

cell line

HT29

cell type

colorectal adenocarcinoma

agent

GW3965

time

2hr

chip antibody

anti-NR1H2 (Active Motif, 61178)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq was performed as previously described (Reddy et al. Molecular Cell 2013). RNA-seq was performed as previously outlned (Gertz et al. 2012) Illumina Single End for ChIP-seq, Illumina Paired End for RNA-seq

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

26509242

Reads aligned (%)

96.0

Duplicates removed (%)

8.8

Number of peaks

6133 (qval < 1E-05)

hg19

Number of total reads

26509242

Reads aligned (%)

95.5

Duplicates removed (%)

9.5

Number of peaks

6040 (qval < 1E-05)