Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBFB

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
SAOS2 cells
cell line
SAOS2
cell type
osteosarcoma cell line
passage number
less than 20 passages
chip antibody
CBFB specific antibody
chip antibody vendor
Bethyl

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNA was extracted by standard phenol approach. NEB ChIP-seq prep kit

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
61893856
Reads aligned (%)
92.7
Duplicates removed (%)
8.3
Number of peaks
14908 (qval < 1E-05)

hg38

Number of total reads
61893856
Reads aligned (%)
93.6
Duplicates removed (%)
6.7
Number of peaks
15460 (qval < 1E-05)

Base call quality data from DBCLS SRA