Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX2

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
SAOS2 cells
cell line
SAOS2
cell type
osteosarcoma cell line
passage number
less than 20 passages
chip antibody
Custom made RUNX2 antibody

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
27567011
Reads aligned (%)
89.4
Duplicates removed (%)
5.2
Number of peaks
1386 (qval < 1E-05)

hg38

Number of total reads
27567011
Reads aligned (%)
91.7
Duplicates removed (%)
3.7
Number of peaks
3088 (qval < 1E-05)

Base call quality data from DBCLS SRA